<html><body><title>AT5G53220.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u525322001000i/AT5G53220.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u525322001000i/AT5G53220.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u525322001000i/AT5G53220.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422778001000i">AT4G27780.1</a></td><td>0.96008</td><td>ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2)</td><td>OMAT4P008940</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422132001000i">AT4G21320.1</a></td><td>0.95772</td><td>HSA32 (HEAT-STRESS-ASSOCIATED 32)</td><td>OMAT4P006490</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223359001000i">AT2G33590.1</a></td><td>0.955247</td><td>cinnamoyl-CoA reductase family</td><td>OMAT2P008290</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423621003000i">AT4G36210.3</a></td><td>0.954569</td><td>unknown protein</td><td>OMAT4P012442,OMAT4P012445</td><td>[OMAT4P012442]-, [OMAT4P012445]-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525024001000i">AT5G50240.1</a></td><td>0.954109</td><td>PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2)</td><td>OMAT5P014440</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324323001000i">AT3G43230.1</a></td><td>0.944037</td><td>zinc finger (FYVE type) family protein</td><td>OMAT3P011290</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122305001000i">AT1G23050.1</a></td><td>0.943222</td><td>hydroxyproline-rich glycoprotein family protein</td><td>OMAT1P008490</td><td>-</td><td>OMAT1P107430</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521380002000i">AT5G13800.2</a></td><td>0.941924</td><td>hydrolase, alpha/beta fold family protein</td><td>OMAT5P103850</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224256001000i">AT2G42560.1</a></td><td>0.940764</td><td>late embryogenesis abundant domain-containing protein / LEA domain-containing protein</td><td>OMAT2P110840</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320379002000i">AT3G03790.2</a></td><td>0.938773</td><td>ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein</td><td>OMAT3P001250</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423472001000i">AT4G34720.1</a></td><td>-0.869635</td><td>AVA-P1</td><td>OMAT4P110151</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321150001000i">AT3G11500.1</a></td><td>-0.855068</td><td>small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative</td><td>OMAT3P103770</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224250001000i">AT2G42500.1</a></td><td>-0.851279</td><td>PP2A-4</td><td>OMAT2P110810</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222093001000i">AT2G20930.1</a></td><td>-0.849144</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120777001000i">AT1G07770.1</a></td><td>-0.840942</td><td>RPS15A (ribosomal protein s15a)</td><td>OMAT1P102390</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222125001000i">AT2G21250.1</a></td><td>-0.829104</td><td>mannose 6-phosphate reductase (NADPH-dependent), putative</td><td>OMAT2P103460</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325293001000i">AT3G52930.1</a></td><td>-0.829005</td><td>fructose-bisphosphate aldolase, putative</td><td>OMAT3P112520</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321341001000i">AT3G13410.1</a></td><td>-0.825752</td><td>unknown protein</td><td>OMAT3P104460</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325756001000i">AT3G57560.1</a></td><td>-0.825367</td><td>aspartate/glutamate/uridylate kinase family protein</td><td>OMAT3P114250</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521171001000i">AT5G11710.1</a></td><td>-0.825337</td><td>epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related</td><td>OMAT5P004000</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u525322001000i/AT5G53220.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>23/200</td><td>2.73</td><td>4.29e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>25/200</td><td>1.84</td><td>1.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>26/200</td><td>1.81</td><td>1.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>26/200</td><td>1.81</td><td>1.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0006345</td><td>pollen tube</td><td>43/200</td><td>1.48</td><td>2.99e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007605</td><td>androecium developmental stages</td><td>41/200</td><td>1.40</td><td>9.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>29/200</td><td>2.21</td><td>1.99e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidoreductase</td><td>-</td><td>14/200</td><td>3.00</td><td>7.76e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr013083</td><td>-</td><td>11/200</td><td>3.51</td><td>8.25e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>visible</td><td>-</td><td>12/200</td><td>3.24</td><td>1.00e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stage</td><td>-</td><td>35/200</td><td>1.81</td><td>1.99e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr001841</td><td>-</td><td>10/200</td><td>3.26</td><td>2.86e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>27/200</td><td>1.85</td><td>6.84e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>27/200</td><td>1.84</td><td>7.66e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>70/200</td><td>1.39</td><td>7.87e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>27/200</td><td>1.79</td><td>1.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>12/200</td><td>2.42</td><td>1.52e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>64/200</td><td>1.31</td><td>5.61e-03</td><td>-</td><td>yes</td></tr></table><table><tr><td valign=top>(*1)</td><td>[M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
with_OMAT_gene
AT5G53220.1
0.56415999999999999481